(2R,4R)-4-hydroxypipecolinic acid

A summary of the most common chemical descriptors (InChI Key and SMILES codes) for (2R,4R)-4-hydroxypipecolinic acid are summarized together with 3D and 2D structures and relevant physico-chemical properties.

What is (2R,4R)-4-hydroxypipecolinic acid?

The molecule (2R,4R)-4-hydroxypipecolinic acid presents a molecular formula of C6H11NO3 and its IUPAC name is (2R,4R)-4-oxidanylpiperidine-2-carboxylic acid.

3D structure

Cartesian coordinates

Geometry of (2R,4R)-4-hydroxypipecolinic acid in x, y and z coordinates (Å units) to copy/paste elsewhere. Generated with Open Babel software.

2D drawing

 

(2R,4R)-4-hydroxypipecolinic acid KRHNXNZBLHHEIU-RFZPGFLSSA-N chemical compound 2D structure molecule svg
(2R,4R)-4-hydroxypipecolinic acid

 

Molecule descriptors

 
IUPAC name(2R,4R)-4-hydroxypipecolinic acid
InChI codeInChI=1S/C6H11NO3/c8-4-1-2-7-5(3-4)6(9)10/h4-5,7-8H,1-3H2,(H,9,10)/t4-,5-/m1/s1
InChI KeyKRHNXNZBLHHEIU-RFZPGFLSSA-N
SMILESC1CN[C@H](C[C@@H]1O)C(=O)O

Physico-Chemical properties

IUPAC name(2R,4R)-4-oxidanylpiperidine-2-carboxylic acid
Molecular formulaC6H11NO3
Molecular weight145.16
Melting point (ºC)
Boiling point (ºC)
Density (g/cm3)
Molar refractivity
LogP-3
Topological polar surface area69.6

LogP and topological polar surface area (TPSA) values were estimated using Open Babel software.

The n-octanol/water partition coeficient (Kow) data is applied in toxicology and drug research. Kow values are used, to guess the environmental fate of persistent organic pollutants. High partition coefficients values, tend to accumulate in the fatty tissue of organisms. Molecules with a log(Kow) (or LogP) greater than 5 are considered to bioaccumulate.

TPSA values are the sum of the surface area over all polar atoms or molecules, mainly oxygen and nitrogen, also including hydrogen atoms.

In medicinal chemistry, TPSA is used to assess the ability of a drug to permeabilise cells.

For molecules to penetrate the blood-brain barrier (and act on receptors in the central nervous system), TPSA values below 90 Å2 are required. Thus, molecules with a polar surface area greater than 140 Å2 tend to be poorly permeable to cell membranes.