6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester

A summary of the most common chemical descriptors (InChI Key and SMILES codes) for 6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester are summarized together with 3D and 2D structures and relevant physico-chemical properties.

What is 6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester?

The molecule 6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester presents a molecular formula of C32H22O2 and its IUPAC name is methyl 6-[(Z)-2-phenanthren-3-ylethenyl]phenanthrene-3-carboxylate.

3D structure

Cartesian coordinates

Geometry of 6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester in x, y and z coordinates (Å units) to copy/paste elsewhere. Generated with Open Babel software.

2D drawing

 

6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester KSRHJYPSCIGNOD-SREVYHEPSA-N chemical compound 2D structure molecule svg
6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester

 

Molecule descriptors

 
IUPAC name6-[(Z)-2-(3-phenanthryl)vinyl]phenanthrene-3-carboxylic acid methyl ester
InChI codeInChI=1S/C32H22O2/c1-34-32(33)27-17-16-26-15-14-25-11-9-22(19-30(25)31(26)20-27)7-6-21-8-10-24-13-12-23-4-2-3-5-28(23)29(24)18-21/h2-20H,1H3/b7-6-
InChI KeyKSRHJYPSCIGNOD-SREVYHEPSA-N
SMILESCOC(=O)C1=CC2=C(C=CC3=C2C=C(C=C3)/C=C\C4=CC5=C(C=CC6=CC=CC=C65)C=C4)C=C1

Physico-Chemical properties

IUPAC namemethyl 6-[(Z)-2-phenanthren-3-ylethenyl]phenanthrene-3-carboxylate
Molecular formulaC32H22O2
Molecular weight438.5
Melting point (ºC)
Boiling point (ºC)
Density (g/cm3)
Molar refractivity
LogP9
Topological polar surface area26.3

LogP and topological polar surface area (TPSA) values were estimated using Open Babel software.

The n-octanol/water partition coeficient (Kow) data is applied in toxicology and drug research. Kow values are used, to guess the environmental fate of persistent organic pollutants. High partition coefficients values, tend to accumulate in the fatty tissue of organisms. Molecules with a log(Kow) (or LogP) greater than 5 are considered to bioaccumulate.

TPSA values are the sum of the surface area over all polar atoms or molecules, mainly oxygen and nitrogen, also including hydrogen atoms.

In medicinal chemistry, TPSA is used to assess the ability of a drug to permeabilise cells.

For molecules to penetrate the blood-brain barrier (and act on receptors in the central nervous system), TPSA values below 90 Å2 are required. Thus, molecules with a polar surface area greater than 140 Å2 tend to be poorly permeable to cell membranes.