(2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester

A summary of the most common chemical descriptors (InChI Key and SMILES codes) for (2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester are summarized together with 3D and 2D structures and relevant physico-chemical properties.

What is (2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester?

The molecule (2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester presents a molecular formula of C25H30N4O9S2 and its IUPAC name is [(2S,5R)-3,3-dimethyl-4,4,7-tris(oxidanylidene)-4lambda6-thia-1-azabicyclo[3.2.0]heptan-2-yl]carbonyloxymethyl (2S,5R,6R)-6-[[(2R)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-7-oxidanylidene-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate.

3D structure

Cartesian coordinates

Geometry of (2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester in x, y and z coordinates (Å units) to copy/paste elsewhere. Generated with Open Babel software.

2D drawing

 

(2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester OPYGFNJSCUDTBT-PMLPCWDUSA-N chemical compound 2D structure molecule svg
(2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester

 

Molecule descriptors

 
IUPAC name(2S,5R,6R)-6-[[(2R)-2-amino-2-phenyl-acetyl]amino]-7-keto-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid [(2S,5R)-4,4,7-triketo-3,3-dimethyl-4lambda6-thia-1-azabicyclo[3.2.0]heptane-2-carbonyl]oxymethyl ester
InChI codeInChI=1S/C25H30N4O9S2/c1-24(2)17(29-20(32)16(21(29)39-24)27-19(31)15(26)12-8-6-5-7-9-12)22(33)37-11-38-23(34)18-25(3,4)40(35,36)14-10-13(30)28(14)18/h5-9,14-18,21H,10-11,26H2,1-4H3,(H,27,31)/t14-,15-,16-,17+,18+,21-/m1/s1
InChI KeyOPYGFNJSCUDTBT-PMLPCWDUSA-N
SMILESCC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)[C@@H](C3=CC=CC=C3)N)C(=O)OCOC(=O)[C@H]4C(S(=O)(=O)[C@H]5N4C(=O)C5)(C)C)C

Physico-Chemical properties

IUPAC name[(2S,5R)-3,3-dimethyl-4,4,7-tris(oxidanylidene)-4lambda6-thia-1-azabicyclo[3.2.0]heptan-2-yl]carbonyloxymethyl (2S,5R,6R)-6-[[(2R)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-7-oxidanylidene-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate
Molecular formulaC25H30N4O9S2
Molecular weight594.7
Melting point (ºC)
Boiling point (ºC)
Density (g/cm3)
Molar refractivity
LogP
Topological polar surface area216

LogP and topological polar surface area (TPSA) values were estimated using Open Babel software.

The n-octanol/water partition coeficient (Kow) data is applied in toxicology and drug research. Kow values are used, to guess the environmental fate of persistent organic pollutants. High partition coefficients values, tend to accumulate in the fatty tissue of organisms. Molecules with a log(Kow) (or LogP) greater than 5 are considered to bioaccumulate.

TPSA values are the sum of the surface area over all polar atoms or molecules, mainly oxygen and nitrogen, also including hydrogen atoms.

In medicinal chemistry, TPSA is used to assess the ability of a drug to permeabilise cells.

For molecules to penetrate the blood-brain barrier (and act on receptors in the central nervous system), TPSA values below 90 Å2 are required. Thus, molecules with a polar surface area greater than 140 Å2 tend to be poorly permeable to cell membranes.